Summary workflow

Define the set of proteins of your interest
Species   
   
Pathology   
   
Protein   
   
Strain type   
   
Entry type   
   
Host   
   

Parameters for Block Entropy analysis

Block size (peptide length) 
   
Conservation threshold 
   
Max # of peptides required to fulfill conservation threshold 
   
Max gap and ambiguous character (X) fraction allowed in a block 
   
Min conservation of each species 




Version 1.1, June 2011. Developed by Bioinformatics Core at Cancer Vaccine Center, Dana-Farber Cancer Institute.